Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHCPFCRHPDSRVI--DSRETDEGQAIRRRRSCPECGRRFTTVETAVLAVVKRSGVTEPFSREKVISGVRRACQGRQVDDDALNLLAQQVEDSVRAAGSPEIPSHDVGLAILGPLRELDEVAYLRFASVYRSFSSADDFAREIEALRAHRNLSAHS |
1TWF Chain:I ((74-114)) | -ECPKCHSRENVFFQSQQRRKDTSMV--LFFVCLSCSHIFTSDQ---------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TWF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1568 for 182 contacts (-8.6/contact) +
2D Compatibility (PS) -4259 + (NN) -5045 + (LL) 8676
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -4646.0 ( -25.53 by residue)
QMean score : 0.596
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