Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLATEA
3GWC Chain:F ((3-244))
--ETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATS------
General information:
TITO was launched using:
RESULT:
Template:
3GWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112663 for 1815 contacts (-62.1/contact) +
2D Compatibility (PS) -26948 + (NN) -18512 + (LL) 832
1D Compatibility (HY) -29200 + (ID) 12100
Total energy: -198591.0 ( -109.42 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3GWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GWC-query.scw
PDB file :
Tito_Scwrl_3GWC.pdb
: