Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAY--NWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDVCVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPVIGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDA---SVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAIE-QVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDAT-EMLRQKGLPGARARRRGLSDAALGTPRRHLS-YKTVWYGSALVVADRWFPSSKTCHACRHVQD--IGWDEQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA---- |
| 1XIP Chain:A ((1-381)) | ASSLKDEVP---TETSEDFGFKFL-GQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGE--LQLLRDHITSDSTPL-----------------------------TFKWEKEIPD------VIFVCFHG-----DQVLVSTR-----NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV--TNSQLAVLLKDRSFQSFAWRNG---EMEKQFEFSLPSELEELP------------VEEYSPLSVTILS--------PQDFLAVFGNVISETDDEV---SYDQKMYIIKHID-GSASFQETFDITPPFGQIVRFPYMYKVTLSGLI-------EPDANVNVLASSCSSEVSIWDSK------QVIEPSQDSERAVLPISEETDKDTNPIGVAV----DVVTSGLPLVYILNNEG-----------SLQIVGLFH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 59679 for 2819 contacts (21.2/contact) +
2D Compatibility (PS) -35333 + (NN) 10345 + (LL) 7184
1D Compatibility (HY) 800 + (ID) 2400
Total energy: 40275.0 ( 14.29 by residue)
QMean score : -0.012
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