Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSG-PEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
1NVJ Chain:E ((11-126))
-----------------QPFSVGEEYPWLAERDEDGAVVTFTGKVRN-------NALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWK---------------
General information:
TITO was launched using:
RESULT:
Template:
1NVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80745 for 744 contacts (-108.5/contact) +
2D Compatibility (PS) -12041 + (NN) -9577 + (LL) 1756
1D Compatibility (HY) -7200 + (ID) 2050
Total energy: -109857.0 ( -147.66 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1NVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVJ-query.scw
PDB file :
Tito_Scwrl_1NVJ.pdb
: