Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACVDGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRPRRLGDLLPDAFGLDDLPRERR
3MPZ Chain:D ((23-142))
---VNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLIDHAHGPRPLRELLPDAF----------
General information:
TITO was launched using:
RESULT:
Template:
3MPZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91469 for 967 contacts (-94.6/contact) +
2D Compatibility (PS) -13237 + (NN) -8836 + (LL) 284
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -133008.0 ( -137.55 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3MPZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MPZ-query.scw
PDB file :
Tito_Scwrl_3MPZ.pdb
: