Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIDPNSIGAVTEPMLFEWTDRDTLLYAIGVGAGTGDLAFTTENSHGIDQQVLPTYAVICCPAFGAAA----KVGTFNPA-ALLHGSQGIRLH-APLPAAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARGERPAAPE----FPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHG-LCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
| 1PN2 Chain:A ((4-275)) | -------------DPVWRFDDRDVILYNIALGATTKQLKYVYENDS--DFQVIPTFGHLITFNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKG--TNVVIVHGSKSVDNKSGELIYSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKG-AKFPKPILHGMC-TYGLSAKALIDKFGM-----FNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRG----TIAINNAAIKLVG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PN2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108087 for 2112 contacts (-51.2/contact) +
2D Compatibility (PS) -28260 + (NN) -17726 + (LL) 1228
1D Compatibility (HY) -17600 + (ID) 4950
Total energy: -175395.0 ( -83.05 by residue)
QMean score : 0.434
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