Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALDLTAYFDRINYRGATDPTLDVLQDLVTVHSRTIPFENLDPLLGVPV-DDLSPQALADKLVLRRRGGYCFEHNGLMGYVLAELGYRVRRFAARVVWKLAPDAPLPPQTHTLLGVTFPGSGGCYLVDVGFGGQTPTSPLRLETGAVQPTTHEPYRLEDRVDGFVLQAMVRDTWQTLYEFTTQTRPQIDLKVASWYASTHPASKFVTGLTAAVITDDARWNLSGRDLAVHRAGGTEKIRLADAAAVVDTLSERFGINVADIGERGALETRIDELLARQPGADAP
4C5P Chain:A ((7-276))
---DLTGYLDRINYRGATDPTLDVLRDLVSAHTGAIAFENLDPLMGVPVDD-LSAEALADKLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPGCQGPYLVDVGFGGMTPTAPLRLETGTVQQTALEPYRLDDRGDGLVLQAMVRDEWQALYEFSTLTRPQVDLRVGSWFVSTHPTSHFVTGLMAATVADDARWNLMGRNLAIHRRGGTEKILLEDAAAVVDTLGDRFGINVADVGERGRLEARIDKV----------
General information:
TITO was launched using:
RESULT:
Template:
4C5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142641 for 2233 contacts (-63.9/contact) +
2D Compatibility (PS) -28850 + (NN) -15835 + (LL) 752
1D Compatibility (HY) -30800 + (ID) 10250
Total energy: -227624.0 ( -101.94 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4C5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5P-query.scw
PDB file :
Tito_Scwrl_4C5P.pdb
: