Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPA----GFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
2JG6 Chain:A ((1-185))
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN-
General information:
TITO was launched using:
RESULT:
Template:
2JG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87543 for 1382 contacts (-63.3/contact) +
2D Compatibility (PS) -19529 + (NN) -13230 + (LL) 192
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -138910.0 ( -100.51 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2JG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JG6-query.scw
PDB file :
Tito_Scwrl_2JG6.pdb
: