Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP
3IVP Chain:A ((12-117))
-ALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKS-TKRRQLENKIDNFTDADLVIMESVADGIVKSKEVGE-------------------
General information:
TITO was launched using:
RESULT:
Template:
3IVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42041 for 605 contacts (-69.5/contact) +
2D Compatibility (PS) -11854 + (NN) -9312 + (LL) 1156
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -67501.0 ( -111.57 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3IVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IVP-query.scw
PDB file :
Tito_Scwrl_3IVP.pdb
: