Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQIN-CYQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY
4FTF Chain:A ((1-109))
----------------------GAMAEKQRNLELLAGNRASLLSTELP-LEFGPLNILRATAKGSTVELMMVYNTDANNAKPTEQVLQSAVSSFCANKDIRSNLDVGISYRIQMR-----------NTRGQLMADQLVTKESC---
General information:
TITO was launched using:
RESULT:
Template:
4FTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17509 for 727 contacts (-24.1/contact) +
2D Compatibility (PS) -11144 + (NN) 1208 + (LL) 2568
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -30527.0 ( -41.99 by residue)
QMean score : 0.087
(partial model without unconserved sides chains):
PDB file :
Tito_4FTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FTF-query.scw
PDB file :
Tito_Scwrl_4FTF.pdb
: