Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKEIQILRIDRVEITP
2KUB Chain:A ((128-208))
ENLDKMISEAEVLNDMAARKLITLDAEQQLELMKSLVATQSQLEATKNLIGDPNAT----------VADLQIAYTTLGNNTQALGNELIKL--
General information:
TITO was launched using:
RESULT:
Template:
2KUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3958 for 552 contacts (7.2/contact) +
2D Compatibility (PS) -8588 + (NN) -2278 + (LL) 644
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -8414.0 ( -15.24 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_2KUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KUB-query.scw
PDB file :
Tito_Scwrl_2KUB.pdb
: