Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLINTQVQPFKVNAFHNGKFIEVTEESLKGKWSVLIFMPAAFTFNCPTEIEDAANNYGEFQKAGAEVYIVTTDTHFSHKVWHETSPAVGKAQFPLIGDPTHQLTNAFGVHIPEEGLALRGTFVINPEGVIKTVEIHSNEIARDVGETVRKLKAAQYTAAHPGEVCPAKWKEGEKTLAPSLDLVGKI
1YEP Chain:D ((1-166))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCP--------------------
General information:
TITO was launched using:
RESULT:
Template:
1YEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92649 for 1267 contacts (-73.1/contact) +
2D Compatibility (PS) -18471 + (NN) -8380 + (LL) 1504
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -137396.0 ( -108.44 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_1YEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YEP-query.scw
PDB file :
Tito_Scwrl_1YEP.pdb
: