Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQC--QQVCPVDCIPLD-DANVESKDQLMEKYRKITGKA
1PC5 Chain:A ((2-85))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCA--LCEPECGAQAIFSEDEVPEDMQEFIQLNAELAEVWPNITEKK
General information:
TITO was launched using:
RESULT:
Template:
1PC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22181 for 561 contacts (-39.5/contact) +
2D Compatibility (PS) -8815 + (NN) -10426 + (LL) 80
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -49842.0 ( -88.84 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1PC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PC5-query.scw
PDB file :
Tito_Scwrl_1PC5.pdb
: