Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGLEAMEAKFSTNGARREALNFFGLADQSAFNGVFRGSFKGQKGASVPVVATLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEIDPVNGVRAINGVDQLAGMRNDLGL
3J9Q Chain:S ((3-168))
-IPQTLTNTNLFIDGVSFAGDVPSLTLPKLAVKTEQYRAGGMDAPVSIDMGLEAMEAKFSTNGARREALNFFGLADQSAFNGVFRGSFKGQKGASVPVVATLRGLLKEVDPGDWKAGEKAEFKYAVAVSYYKLEVDGREVYEIDPVNGVRAINGVDQLAGMRNDLGL
General information:
TITO was launched using:
RESULT:
Template:
3J9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54377 for 1096 contacts (-49.6/contact) +
2D Compatibility (PS) -17277 + (NN) -2560 + (LL) 208
1D Compatibility (HY) -22000 + (ID) 8300
Total energy: -104306.0 ( -95.17 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_3J9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J9Q-query.scw
PDB file :
Tito_Scwrl_3J9Q.pdb
: