Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDSRQSAMVKLFLASYDDFKARLKRRLGSEDLACDVLHETYLRVDRLDDA-LEVKKPQAYLFRIALNIAADRREGDARLLTGEEVAELLQVADEGLDPERIVGGHAEIRRLLEALCELPARRRQILIASRLEETPHAEISRRFGISTRTVEKELKAALWFCAERLERKVIQRFGPGAGKPS
2LFW Chain:A ((2-156))
-------SLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDVDPRLGLYRMFQGIWASANADGEAQT------S-------------QSDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2LFW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27949 for 1001 contacts (-27.9/contact) +
2D Compatibility (PS) -16956 + (NN) -11219 + (LL) 1520
1D Compatibility (HY) 1600 + (ID) 1000
Total energy: -54004.0 ( -53.95 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_2LFW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LFW-query.scw
PDB file :
Tito_Scwrl_2LFW.pdb
: