Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWKYLAELGKACLAARPNAGHEAIAELQKHKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGAE---SGGLEEHLHGQLPPRCAACGG-VLRPPVVLFEEMLPEEAIDTLYRELR--KGFDAVLVVGTT------ASFPYIVEPVLRTRQAGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR |
1YC2 Chain:B ((5-248)) | ------IRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEV---ASISG--FKRNPRAFWEFSMEM-KDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEI-PRCRKCGSYYVKPRVVLFGEPLPQR---TLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYI------AKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVKR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1YC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -115521 for 1885 contacts (-61.3/contact) +
2D Compatibility (PS) -25368 + (NN) -15812 + (LL) 804
1D Compatibility (HY) -18400 + (ID) 4750
Total energy: -179047.0 ( -94.99 by residue)
QMean score : 0.504
|
|
|