Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------MMHPRRLLAVLGVVVLTSMTSCTSFSSSRSSSMDKTGWITHCFGRFLIDLPPDAVINAGYYLWGDRIEYLDDKPTELAARVDRLEQEWRTQRHKSKGNMFLRKIDFGNESVGLLSWSSEVASKTYLLDTYVTSKPTWHVYRWKGKVSVDREQHAVEISRALARNLRSRAPKEIPSEPGFCIDHAYIAGDSFQVERFGVGVTFPEHPGARFEFRSSTGAELNSLLERVDGFVQNMLSTFAGMETLRKGKHPVGSLPGEEYLVAGSDKGQRGYTFMWEVQGKEESLTEPNLTAGLAVLERSNENGKPPPPAFKSDKEALELWDTIVDSIRVRPTSSSPRGGNAGPSPAPKPATPGGQTLGDHYVYEEFLSSLKPKDSWLDDL---- |
| 4I71 Chain:A ((1-330)) | GSHMAKTVILDHDGNKDDFVAMILLLSNPKKVNLIGCIC-------TDADCFVENGFDVTGKIMCAMHRLIK---------------TPLFPIGKSTATA----VNAFPTEWRFSAKNLDDMPFLNIVEDVALWEKLKPENEAHNGQQLLADLVMKSKE---------KVTVCVTGPLSNMAWCIEKYGEAFTSK---------VEECVIMGGAVDV---GGNVFLPTTDG---------SAEWNIYWD--PPAAKKVLCC-----------------PNIRCVLFSLDATNT----VPVRSVDVKGFGAQNQYLLSQMVGTMWA--MSTHEEILRDGDAYYAWDALTAAYILEPTIATLEPVALDVDV--SKGKSEGRTPRAPCVHVARNPSKQMFHDLVFASTRVC |
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General information:
TITO was launched using:
| RESULT:
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Template: 4I71.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10583 for 2825 contacts (3.7/contact) +
2D Compatibility (PS) -30322 + (NN) -4033 + (LL) 4512
1D Compatibility (HY) -10800 + (ID) 2350
Total energy: -32410.0 ( -11.47 by residue)
QMean score : 0.074
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