Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFE-DNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
3NOJ Chain:A ((28-186))
-RLGVATVHEAQN-RKGLLSSKMRPIQQGTSLAGSAVTVLVAPGDNWMFHVAVEQCRPGDVLVVSPSSPCTDGYFGDLLATSLQARGVRALIVDAGVRDTQTLRDMGFAVWARAINAQGTVKETLGSVNLPVICGGQLINPGDIVVADDDGVVVVRRDECEST
General information:
TITO was launched using:
RESULT:
Template:
3NOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97897 for 1343 contacts (-72.9/contact) +
2D Compatibility (PS) -17567 + (NN) -11207 + (LL) 312
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -138259.0 ( -102.95 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3NOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NOJ-query.scw
PDB file :
Tito_Scwrl_3NOJ.pdb
: