Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRL-RRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGY---YENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
3JUM Chain:A ((38-184))
--------------AARQHNRKIVEQYMHTRGEARLKR-HLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPG---YPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGLPS
General information:
TITO was launched using:
RESULT:
Template:
3JUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28729 for 945 contacts (-30.4/contact) +
2D Compatibility (PS) -15525 + (NN) -6361 + (LL) 1036
1D Compatibility (HY) -14800 + (ID) 4400
Total energy: -68779.0 ( -72.78 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3JUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JUM-query.scw
PDB file :
Tito_Scwrl_3JUM.pdb
: