Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRCRNCGERPASEGHICMVCKRRSDIDPYKALIAMALLVYCGVSLAAYLKPHMPAPPPTAGSSVQPAEELAQRARQATLEQRGI
1VDD Chain:A ((55-74))
-HVCPICFN--ITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGME
General information:
TITO was launched using:
RESULT:
Template:
1VDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5236 for 105 contacts (-49.9/contact) +
2D Compatibility (PS) -1965 + (NN) 556 + (LL) 168
1D Compatibility (HY) -800 + (ID) 250
Total energy: -7527.0 ( -71.69 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_1VDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDD-query.scw
PDB file :
Tito_Scwrl_1VDD.pdb
: