Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVKISQTADVQRFFEEASGQLNERGDPRTKALVRRILDDTAKLIEEMQVTPDEFWKAVDYLNRLGSRQEAGLLAAGLGLEHYLDLLLDAQDAEAGLTGGTPRTIEGPLYVAGAPLSDGEARMDDGR--DAGTVMFLQGRVSGPDGQPLAGAIVDVWHANTQGTYSYFDSS-QSEYNLRRRIRTDADGRYRARSIVPSGYGCPSDGPTQELLDR-LGRHGQRPAHIHFFVSAPGHRHLTTQINLAGDRYLWDDFAYATRDGLIGDLRFNDDPAAARDRGVEGGRFAELDFDFQLQASPAPAAERRSQRPRALQG |
3O6R Chain:A ((5-255)) | ----------------------------RVIELFDEFTDLIRDFIVRHEITTPEYETIMQYMISVG---EAG--EWPLWLDAFFETTVDS--VSYGKGNWTSSAIQGPFFKEGAPLLTGKPATLPMRADEPGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIRITADGYRPLITQLYFEGDPYLDSDSCSAVKSELVLPVNKID---------IDGETWQLVDFNFILQ------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3O6R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -58767 for 1822 contacts (-32.3/contact) +
2D Compatibility (PS) -26641 + (NN) -13596 + (LL) 3540
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -116564.0 ( -63.98 by residue)
QMean score : 0.488
|
|
|