Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGGPA-----------FRHSEAFSFQVATDDQAETDRLWNAIVDNGGE---------ESACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFKG
3R4Q Chain:A ((13-133))
-------ALYAD-DLDAAEAFYRDVFGLEMVLK-L--P--------G--QLVFFKCGRQMLLLFDPQESSRADANNPIPRHGAVGQGHFCFYADDKAEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDPAGNSVEVGEGK-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3R4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50247 for 693 contacts (-72.5/contact) +
2D Compatibility (PS) -11086 + (NN) -5739 + (LL) 3964
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -67108.0 ( -96.84 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3R4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R4Q-query.scw
PDB file :
Tito_Scwrl_3R4Q.pdb
: