Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSAEEIQRMSVAGALTAKVLEALDEVVRPGISTAEIDRFCERYIVDTLAAIPGSKGQYGYPFTVNTSVNEVVCHGWPSAQQILRDGDIVNVDVTVIKDGYFGDSSKMYRVGAIDRQAQKLLDVTRECLYRAIRVVRPDATLGDIGHAIQSHAEANGYSVVREYCGHGIGRKMHEAPQVLHFGRAGAGARLKAGMTFTIEPMINQGGHAVKLHKDGWTVTTRDRRLSAQYEHTVLVTERGCRVLTLRDEEREALADLAG
4FO7 Chain:B ((5-253))
-IKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPN-EKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDE---------
General information:
TITO was launched using:
RESULT:
Template:
4FO7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116639 for 1925 contacts (-60.6/contact) +
2D Compatibility (PS) -26978 + (NN) -9373 + (LL) 1092
1D Compatibility (HY) -26000 + (ID) 7200
Total energy: -185098.0 ( -96.15 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4FO7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FO7-query.scw
PDB file :
Tito_Scwrl_4FO7.pdb
: