Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNDMEDHLLTVLSVASGVPKEEISRDSRM-EDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHRAA
3GZM Chain:A ((4-79))
--KSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN--
General information:
TITO was launched using:
RESULT:
Template:
3GZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38116 for 500 contacts (-76.2/contact) +
2D Compatibility (PS) -8105 + (NN) -5634 + (LL) 356
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -56549.0 ( -113.10 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_3GZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZM-query.scw
PDB file :
Tito_Scwrl_3GZM.pdb
: