Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
2JDK Chain:B ((2-115))
-ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
2JDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45245 for 839 contacts (-53.9/contact) +
2D Compatibility (PS) -12970 + (NN) -11090 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5700
Total energy: -88797.0 ( -105.84 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_2JDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JDK-query.scw
PDB file :
Tito_Scwrl_2JDK.pdb
: