Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPLTLIATITAAPGHAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYMIEQWRDDAALERHQNTEHFLRFSRGNEALLQNVKIDQLYRLA
2PD1 Chain:A ((2-95))
HMTKLALFVRLEAKPGQEAALADFLASALPLANAESGTTAWFALKF--GPSTFGVFDAFADEAGRQAHLNGQIAAALMANAATLLSSPPNIEKVEL-
General information:
TITO was launched using:
RESULT:
Template:
2PD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27095 for 651 contacts (-41.6/contact) +
2D Compatibility (PS) -10455 + (NN) -5492 + (LL) 288
1D Compatibility (HY) -1600 + (ID) 1000
Total energy: -45354.0 ( -69.67 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_2PD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD1-query.scw
PDB file :
Tito_Scwrl_2PD1.pdb
: