Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
4G50 Chain:B ((106-209))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
4G50.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58350 for 787 contacts (-74.1/contact) +
2D Compatibility (PS) -10634 + (NN) 4867 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -74039.0 ( -94.08 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4G50.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G50-query.scw
PDB file :
Tito_Scwrl_4G50.pdb
: