Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTP----NDEESVLSLQVGP-HLCHLAEHPTDHLLMFTRLEGQGD-----------ATANEQNLFSQDPCKPILGRDPESGERLLWNRQPLQLL-DRAQIHHQLEQLVAAAEELR
2FM8 Chain:A ((2-129))
QHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVK-DDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFA-RGGQLLLG--EQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVF-
General information:
TITO was launched using:
RESULT:
Template:
2FM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47036 for 751 contacts (-62.6/contact) +
2D Compatibility (PS) -12206 + (NN) -8908 + (LL) 104
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -74096.0 ( -98.66 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2FM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FM8-query.scw
PDB file :
Tito_Scwrl_2FM8.pdb
: