Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEPLILDAP---NADACIIWLHGLGADRTDFKPVAEALQMVLPS-TRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAP---TFDDLALDERHKRIPVLHLHGSQDDVVDPALGRAAHDALQA--QGVEVGWHDYP-MGHEVSLEEIHDIGAWLRKRL
1FJ2 Chain:B ((8-228))
MSTPLPAIVPAARKATAAVIFLHGLGDTGHGW---AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQ-QKLAGVTALSCWLPLRASFPQGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLL
General information:
TITO was launched using:
RESULT:
Template:
1FJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150604 for 1770 contacts (-85.1/contact) +
2D Compatibility (PS) -22801 + (NN) -9179 + (LL) 260
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -203124.0 ( -114.76 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1FJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJ2-query.scw
PDB file :
Tito_Scwrl_1FJ2.pdb
: