Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGIT---HRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPS-LLERRGQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNAL----VGDGSVTRQPVQVLGS--QVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP
2CFC Chain:B ((3-225))
-------------RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAV----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153088 for 1779 contacts (-86.1/contact) +
2D Compatibility (PS) -23006 + (NN) -12032 + (LL) 5740
1D Compatibility (HY) -14400 + (ID) 4150
Total energy: -200936.0 ( -112.95 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: