Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPE-SLRDLLAARSVADPQALK-GPGGQITFVWQTP-LAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
1K4M Chain:B ((1-213))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKI-YLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR---
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162164 for 1687 contacts (-96.1/contact) +
2D Compatibility (PS) -22732 + (NN) -12596 + (LL) 100
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -218742.0 ( -129.66 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: