Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITACPRPCAWRSYALGLGLLPLAAQAEFLADSSAHLDLRNFYQLRDYRQHDAPQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLDSGRGRSNDGTLPFGANSKEPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESAGSDDMYIMGRDKAHA----SDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDG--------------------AAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLN----GYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW |
4FRX Chain:B ((7-436)) | --------------------------AGFIEDSKASLTLRNFYINTDNRN-----SKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRL--------GTVFPLESNG-EPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGV-LKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIK--TARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSG---DQDENRLIVSYTLPL- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4FRX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -13121 for 2890 contacts (-4.5/contact) +
2D Compatibility (PS) -37239 + (NN) 3347 + (LL) 1872
1D Compatibility (HY) -34400 + (ID) 8600
Total energy: -88141.0 ( -30.50 by residue)
QMean score : 0.195
|
|
|