Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDTTNPIGFTDANELREKNRATVEKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNINIFGTDDPNHFWVECDGHGKILFPGYPEGY---YENHFLHSFELEDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
3JUM Chain:A ((35-184))
-----------AQVAARQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPG---YPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGLP-
General information:
TITO was launched using:
RESULT:
Template:
3JUM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24300 for 974 contacts (-24.9/contact) +
2D Compatibility (PS) -16078 + (NN) -7727 + (LL) 200
1D Compatibility (HY) -15200 + (ID) 4500
Total energy: -67605.0 ( -69.41 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_3JUM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JUM-query.scw
PDB file :
Tito_Scwrl_3JUM.pdb
: