Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAISFRPMTEADLDAVLKIEYAAFSHPWT-RGIFSEGLKNYHCWLMFEGSQQVGHGVIQIILDEAHLLNITVKPESQGRGLGLRLLEHLMREAAGHQARECFLEVRASNQAAYRLYERYGFNEIGRRRDYYPAVGGREDALVMACTLFD
2CNM Chain:C ((7-146))
---------LSTTDLPAAWQIEQRAHAFPWSEKTFFGNQGERYLNLKLTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMALPI--
General information:
TITO was launched using:
RESULT:
Template:
2CNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91280 for 980 contacts (-93.1/contact) +
2D Compatibility (PS) -14938 + (NN) -6898 + (LL) 572
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -126244.0 ( -128.82 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2CNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNM-query.scw
PDB file :
Tito_Scwrl_2CNM.pdb
: