Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIFVFAALAGSAVLAGCASPQHGAIPVVDSGTPVSNQESGGFRITRTQVPRTQQGAATQGIPQGGDSGVVVMVPQGANSAPIQTFPAQSGAAPISSAPLGTGTQYQAPPSSASTPPLGGSYNMPPSGASRSAPTGIPASGSAGSLAADEQLDGPVLAMLTTAQQQQGSGDLNSAAASLERAQRIAPREPQVLYRLAQVRLAQGDAAQAEQVARRGLSYANGRPALQAGLWELIAQAREKQGDSAGAALARQKAKVSS |
2VYI Chain:A ((89-188)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS----KAYGRMGLALSSLNKHVEAVAYYKKALEL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VYI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 1605 for 797 contacts (2.0/contact) +
2D Compatibility (PS) -11753 + (NN) -12256 + (LL) 5288
1D Compatibility (HY) 0 + (ID) 750
Total energy: -17866.0 ( -22.42 by residue)
QMean score : 0.617
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