Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DG--FVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2Y85 Chain:C ((3-240))
LILLPAVDVVEGRAVR----------EYGS-AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNHELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGW-ETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA-------
General information:
TITO was launched using:
RESULT:
Template:
2Y85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190576 for 1961 contacts (-97.2/contact) +
2D Compatibility (PS) -24642 + (NN) -11392 + (LL) 1280
1D Compatibility (HY) -16400 + (ID) 3800
Total energy: -245530.0 ( -125.21 by residue)
QMean score : 0.750
(partial model without unconserved sides chains):
PDB file :
Tito_2Y85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y85-query.scw
PDB file :
Tito_Scwrl_2Y85.pdb
: