Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIG----EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN--RGIVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMACARALAQTLAGNPSQV-AYGPMPVTVKTPACPLVVSPPPRGMDGQW-------LV-------EGSGTDLKVLCRD-TAGRVIGYALTGA-AVNEKLALNKELPGLMA |
| 3OC4 Chain:A ((3-401)) | ----LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG---------------RYIT-EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLS----AVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVL-ETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGDY-YLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OC4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -273024 for 2913 contacts (-93.7/contact) +
2D Compatibility (PS) -38173 + (NN) -16911 + (LL) 1628
1D Compatibility (HY) -17600 + (ID) 3900
Total energy: -347980.0 ( -119.46 by residue)
QMean score : 0.410
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