Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGK---------RTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1M6Z Chain:B ((1-190))
--------------------AGDAEAGQGKVAVCGACHGVDGNSPAPNFPKLAGQGERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFSSQKGSVGYADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH
General information:
TITO was launched using:
RESULT:
Template:
1M6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25528 for 1441 contacts (-17.7/contact) +
2D Compatibility (PS) -20046 + (NN) -12842 + (LL) 1856
1D Compatibility (HY) -16000 + (ID) 7150
Total energy: -79710.0 ( -55.32 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1M6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6Z-query.scw
PDB file :
Tito_Scwrl_1M6Z.pdb
: