Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKPVCLVVAMTPKRGIGINNGLPWPHLTTDFKHFSRVTKTTPEEASRLNGWLPRKFA--KTGDSGLPSPSVGKRFNAVVMGRKTWESMPRKFRPLVDRLNIVVSSSLKEEDIAAEKPQAEGQQRVRVCASLPAALSLLEEEYKDSVDQIFVVGGAGLYEAALSLGVASHLYITRVAREFPCDVFFPAFPGDDILSNKSTAAQAAAPAESVFVPFCPELGREKDNEATYRPIFISKTFSDNGVPYDFVVLEK
1J3K Chain:A ((26-202))
--GKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKET----------KKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKED---------FDEDVYIINKVEDLIVLLGKL---NYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINE-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1J3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68540 for 1029 contacts (-66.6/contact) +
2D Compatibility (PS) -18214 + (NN) -11457 + (LL) 4336
1D Compatibility (HY) -15600 + (ID) 2700
Total energy: -112175.0 ( -109.01 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_1J3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3K-query.scw
PDB file :
Tito_Scwrl_1J3K.pdb
: