Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENYNQTSTDFILLGLFPPSKIGLFLFILFVLIFLMALIGNLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLYGNKSISFIGCGIQSFFFMTFAGAEALLLTSMAYDRYVAICFPLHYPIRMSKRMYVLMITGSWMIGSINSCAHTVYAFRIPYCKSRAINHFFCDVPAMLTLACTDTWVYEYTVFLSSTIFLVFPFTGIACSYGWVLLAVYRMHSA-----------EGRKKAYSTCSTHLTVVTFYYAPFAYTYLCPRSLRS---LT-EDKV--LAVFYTILTPMLNPIIYSLRNKEVMGALTRVIQNIFSVKM |
| 2KS9 Chain:A ((35-324)) | -------------------------WAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLS--ATATKVVICVIWVLALLLAFPQGYY--S-TT-E-TMPSRVVCMIEWPEHPN---KIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229853 for 2128 contacts (-108.0/contact) +
2D Compatibility (PS) -27293 + (NN) -86 + (LL) 2004
1D Compatibility (HY) -24000 + (ID) 2050
Total energy: -281278.0 ( -132.18 by residue)
QMean score : 0.239
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