Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASRYVAVGMI-LSQTVVGVLGSFSVLLHYLSFYCTGCRL-RSTDLIVKHLIVANFLALRCKGVPQTMAAFGVRYFLNALGCKLVFYLHRVGRGVSIGTTCLLSV--FQVITVSSRKSRWAKLKEKAPKHVGFSVLLCWIVCMLVNIIFPMYVTGKWNYTNITVNEDLGYCSGGGNNKI--AQTLRAMLLSFP-DVLCLGLMLWVSSSMVCILHRHKQRVQHIDRSDLSPRASPENRATQSILILVSTFVSSYTLSCLFQVCMALLDN-----------PNSLLVNTSALMSVCFPTLSPFVLMSCDPSVYRFCFAWKR |
| 2LNL Chain:A ((41-321)) | ------VVIIAYALVFLLSLLGNSLVMLV----ILYSRVGRSVTDVYLLNLALADLLFALT--LPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIV-HATRTL----TQ-KRHLVKFVCLGCWGLSMNLSLPFFL-FRQAYHP-----NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAH--------------MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158271 for 1866 contacts (-84.8/contact) +
2D Compatibility (PS) -26377 + (NN) -3920 + (LL) 3088
1D Compatibility (HY) -20000 + (ID) 2250
Total energy: -207730.0 ( -111.32 by residue)
QMean score : ?
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