Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDKLLSELGYKLGRTIGEGSYSKVKVATSKKYKGTVAIKVVDRRRAPPDFVNKFLPRELSILRGVRHPHIVHVFEFIEVCNGKLYIVME-AAATDLLQAVQRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENVLLSPDERRVKLTDFGFGR--QAHGYPDLSTTYCGSAAYASPEVLLGIPYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQ-KRGVLYPEGLELSERCKALIAELLQFSPSARPSAGQVARNCWLRAGDSG
4CZU Chain:D ((13-271))
-----------YELGRTLGEGTFAKVKFARNVENGDNVAIKVIDKEKVLKNKMIAQIKREISTMKLIKHPNVIRMFEVM-ASKTKIYFVLEFVTGGELFDKISSNGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDAN-GALKVSDFGLSALPQQVREDGLLHDTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLTSLYKKIFKAEFTCPPWFSAS--AKKLIKRILDPNPATRITFAEVIENEWFKKGYKA
General information:
TITO was launched using:
RESULT:
Template:
4CZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134095 for 1979 contacts (-67.8/contact) +
2D Compatibility (PS) -27686 + (NN) -11476 + (LL) 840
1D Compatibility (HY) -23600 + (ID) 4550
Total energy: -200567.0 ( -101.35 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4CZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CZU-query.scw
PDB file :
Tito_Scwrl_4CZU.pdb
: