Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNIKTISVKDNNVRLDRYIRRIFPNLKQSVIEKSLRRGLIKVNDCKAK-SSDRVNSGQIITIKYLDYIENANSDCKHNEKLVELLRSNILYEDEYILAINKPAGVIVQGGIKVKISISDLLDQVREGETFKIVHRLDRDTSGAIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKNRGVIDYPLVKKYVSGQEKVVIDK--NSPQDATTRFSIIAKFKLNKPLVQRPIIQVADTQLYEHCNLSLSRVCHLSSLSSCYSSALLCHLSAPILVSSKTDHKQAHYTTFSIKKLDSSIMCRNDTRSVAYLKLQPITGRTHQLRTHLAYINCPILGDGKYGGKKAFVDGIASKIHLHSYSLSLKLPNNKKITITAPLPEHIKKSIEALHTPF |
| 1KSK Chain:A ((2-210)) | -----------SHMRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP--------------------LA-QQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSP--RHHCEKTYLVTLESPVAD--DTAEQFAKG--------VQLHNEKDLTKPAVLEV-----------------------------------------------------------------------------------------ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KSK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54597 for 1401 contacts (-39.0/contact) +
2D Compatibility (PS) -21717 + (NN) -1882 + (LL) 10760
1D Compatibility (HY) -4000 + (ID) 1500
Total energy: -72936.0 ( -52.06 by residue)
QMean score : 0.422
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