Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIKLFFIFTLLFFDAST--YCSCEDIIESIE--ICKEYTCQQYIGNEDFIEHKILGLSSKDLCVYIEKQDNDEMVCHHSKYGMMMEKKYLESIFKVGNQEINDFIDIANL-----------RAKECFFISNQKTSYTNRDYIIKEAVESNFDVLSQYNDIKSIFFDKESVNKMVSEMKKFNLRSSRAAK-------EEILDNFNSKVVSLDSILYLSPDTWKIWVNRKLFTNTKNLKVYSVTENYVTFVWTVNQKMTKKQPNDSKNVYFGYGNIMFTLYPKQKFDLDSLSIK---------- |
| 3MF2 Chain:A ((37-335)) | -ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSF-PNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIG--TPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGLQPH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -32713 for 1898 contacts (-17.2/contact) +
2D Compatibility (PS) -26972 + (NN) 2782 + (LL) 300
1D Compatibility (HY) 800 + (ID) 1700
Total energy: -57503.0 ( -30.30 by residue)
QMean score : 0.080
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