Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNILYRIDKQLSDFTKTEKIIADYILKNPHKIIDMTVNDLADVTNVSTASIVRFSRKMTHQGFQELKIAISRYLPEDIATNPHLELIENESVETLKNKMIARATNTMRFVATNIMDAQIDAICDVLKNARTIFLFGFGASSLTIGDLFQKLSRIGLNVRLLHETHLLVSTFATHDDRDCMIFVTNQGSHSELQSIAQVATHYSIPIITISSTANNPVAQIADYALIYGRTDENEM--RMAATTSLFAQ--LFTVDILYYRFVALNYHAILDCITQSKMALDNYRKHLATIDFKH
1M3S Chain:A ((6-174))
---------------------------------------------------------------------------------------------------YVAEILNELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI--L---TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPG-SP-KDYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDS-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1M3S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165736 for 1271 contacts (-130.4/contact) +
2D Compatibility (PS) -17040 + (NN) -5268 + (LL) 10208
1D Compatibility (HY) -5600 + (ID) 1550
Total energy: -184986.0 ( -145.54 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1M3S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M3S-query.scw
PDB file :
Tito_Scwrl_1M3S.pdb
: