Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIFEQELGKTINVIPCDLNDLKSIQALQFEDNTSFDGFIYSAGLGYFKSISDHSFSEMIETYQLNLISFNVLYTVLRPYLTS---NAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALRLES-P-NLHIMTVNVGPIDTPFHQKAD--P-SM--KYAKKMGEIMLDANQLAEDIIYGIKTKQLEINRPKWMHHALKMYQIAPRFFERCFPKLFKNKA
1CYD Chain:A ((5-233))
FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC--PGIEPVCVDLGDWDATEKALG-GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSA-STSGG----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1CYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143116 for 1810 contacts (-79.1/contact) +
2D Compatibility (PS) -24171 + (NN) -12656 + (LL) 2856
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -185837.0 ( -102.67 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1CYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYD-query.scw
PDB file :
Tito_Scwrl_1CYD.pdb
: