Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKILNTQLIGIFNRLEK-QSLEIQMAAQCLIQAIG-GEGYVYVKGYDDLQFFESFILHSDERLKSSRKL-DAI----KDFKEIDSTDRVLLFAPFYN-DQVALDIQKLID--LDIDVVLISNKPKTDDFPDHLVHFIDLSTPRPI--V-YTEDYDKIVQPHAIALNYVYYDIYTQMIEMTRDLEL
3ETN Chain:A ((28-191))
-------LQKEAQAVLNIPVTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPD-SPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTM--------------
General information:
TITO was launched using:
RESULT:
Template:
3ETN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61769 for 1221 contacts (-50.6/contact) +
2D Compatibility (PS) -16582 + (NN) -10756 + (LL) 2372
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -89585.0 ( -73.37 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3ETN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ETN-query.scw
PDB file :
Tito_Scwrl_3ETN.pdb
: