Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNEVQGIGIPTSHASVQTTPTKEISRTNTINTVDESKTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVELMQRMRDVIGIIFDKRG
3SD2 Chain:A ((50-79))
----------------------------------------------------------------SNILNVSFGRAKDYAIITVTNKATGEIVHS-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3SD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4358 for 94 contacts (-46.4/contact) +
2D Compatibility (PS) -3341 + (NN) -2764 + (LL) 6136
1D Compatibility (HY) -2400 + (ID) 150
Total energy: -6877.0 ( -73.16 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3SD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SD2-query.scw
PDB file :
Tito_Scwrl_3SD2.pdb
: