Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANSMQDSMTHENFNNAYPTNYNAPSQDPFSQAQSYPQNAYTKENSQAQPSKYQNSVPEINIDEEEIPF
3UDG Chain:B ((129-233))
-MNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVN----------RNSTRVEATRVEALAR--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3UDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51969 for 606 contacts (-85.8/contact) +
2D Compatibility (PS) -10272 + (NN) -1888 + (LL) 3272
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -69107.0 ( -114.04 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3UDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDG-query.scw
PDB file :
Tito_Scwrl_3UDG.pdb
: