Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKLPKE-IE-IFVVASKNAHVVALEESNINLKNAMKDLRPSATFFNEQDIHASIASGS-YGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
1SBZ Chain:A ((1-186))
MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDV---AALADFSHNPAD-QAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHP---RWQGL
General information:
TITO was launched using:
RESULT:
Template:
1SBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115268 for 1487 contacts (-77.5/contact) +
2D Compatibility (PS) -20054 + (NN) -13895 + (LL) 528
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -163739.0 ( -110.11 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1SBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBZ-query.scw
PDB file :
Tito_Scwrl_1SBZ.pdb
: